PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017761.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family FAR1
Protein Properties Length: 774aa    MW: 85255.5 Da    PI: 8.3778
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017761.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR192.26.5e-29132221288
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                  fY++YA++vGF++r+s+ ++s+r+++i++r++vCskeg+re + ++   +e+++r+ra tr+gCka+++vkk + gkw+vtk+++eHnH 
  Aco017761.1 132 FYSAYARHVGFRIRISRYTRSRRDNSIISRRLVCSKEGFREVRAHEgflKEQRHRHRAITRVGCKAMIMVKKFEPGKWVVTKFVKEHNHG 221
                  9******************************************9999*99***************************************5 PP

2FAR189.74.1e-28269362290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  fY +YA+++GF+ r+sk  +s+r+++i++r+ vCskeg+re + kk     + k++r+r+ tr+gCka++ vkk ++gkw+vtk+e+eHnH+l 
  Aco017761.1 269 FYINYARSTGFRARISKYCRSRRDNSIISRQIVCSKEGFREMRVKKeisadEGKAKRPRMITRIGCKAMIIVKKVNSGKWVVTKFEKEHNHDLL 362
                  9******************************************9999*99999999************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-25132221IPR004330FAR1 DNA binding domain
PfamPF031015.4E-26269362IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
SLHHSPPWIE AQNLSFHGRC GRRIIAHQAR VSRLSIFDHG LGRFLAPKRG ASYVSIEWMS  60
EMEGELISTT SEAKADIESE DAKTEVSMVS IDIEPSSAHD LDRGKLVASQ SDIDMEPCEG  120
MEFESEEAAR AFYSAYARHV GFRIRISRYT RSRRDNSIIS RRLVCSKEGF REVRAHEGFL  180
KEQRHRHRAI TRVGCKAMIM VKKFEPGKWV VTKFVKEHNH GPVPPRKAEI TSVRPDHDLI  240
GKPYLIGGDT LQEPFEGMEF DSEDAAKLFY INYARSTGFR ARISKYCRSR RDNSIISRQI  300
VCSKEGFREM RVKKEISADE GKAKRPRMIT RIGCKAMIIV KKVNSGKWVV TKFEKEHNHD  360
LLTTKKVPYG QLDIGSGKEL FNSLDDNLGP NGVKIEGECY YGTQGGASRE SLTVLYNQLC  420
HEAIKYAQEG SVTEEIYNVA MSALKEAVEK VSAAKRGILR KHTFIVSHRS NFTNTTQGKS  480
LNEVQCSNEV QLANTEQQLK LLQQQPVSLV LIPSNFLGNS GSSNCSTKGS VMLSVPSNGG  540
QGGDRPEDLD LPTENKREVQ STDKDMHVNG SGSSQNSQEV GDGQISIIQC SDRSISGPSK  600
ANMVAVPALP VTLYMPVMGS LPTACAAATP GRSYTLVATP VEALPLSSCP AEQPVSQSQN  660
LAPSGHSDQY RGPNPLVHAT AIACGARVVP PKAAASLIRA IEAKIKAKGV TVTKSSPHPL  720
EENQREHEQS ITKSEPLPEE MELHSVGRNT TENENSAEDL SVFEKHSRGF IGV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805727.10.0PREDICTED: uncharacterized protein LOC103718605
RefseqXP_008805726.10.0PREDICTED: uncharacterized protein LOC103718605
TrEMBLA0A0E0KBF80.0A0A0E0KBF8_ORYPU; Uncharacterized protein
STRINGLOC_Os03g15040.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90313345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.11e-32FAR1-related sequence 7